Generated by Cython 3.0.2
Yellow lines hint at Python interaction.
Click on a line that starts with a "+" to see the C code that Cython generated for it.
Raw output: _le_radial_gradient_convergence.c
+001: # cython: infer_types=True, wraparound=False, nonecheck=False, boundscheck=False, cdivision=True, language_level=3, profile=False, autogen_pxd=False
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002:
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004: cimport numpy as np
005:
006: from cython.parallel import parallel, prange
007:
008: from libc.math cimport sqrt, pow
+009: from .__opencl__ import cl, cl_array
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+010: from .__liquid_engine__ import LiquidEngine
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012:
013: cdef extern from "_c_sr_radial_gradient_convergence.h":
014: float _c_calculate_rgc(int xM, int yM, float* imIntGx, float* imIntGy, int colsM, int rowsM, int magnification, float Gx_Gy_MAGNIFICATION, float fwhm, float tSO, float tSS, float sensitivity) nogil
015:
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__pyx_v_rowsM = ((int)(((float)(__pyx_v_gradient_row_interp.shape[1])) / __pyx_v_Gx_Gy_MAGNIFICATION));
+090: cdef int colsM = <int>(gradient_row_interp.shape[2] / Gx_Gy_MAGNIFICATION)
__pyx_v_colsM = ((int)(((float)(__pyx_v_gradient_row_interp.shape[2])) / __pyx_v_Gx_Gy_MAGNIFICATION));
091:
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093:
094: cdef int f, rM, cM
+095: with nogil:
{
#ifdef WITH_THREAD
PyThreadState *_save;
_save = NULL;
Py_UNBLOCK_THREADS
__Pyx_FastGIL_Remember();
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__Pyx_FastGIL_Forget();
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__pyx_t_3 = __pyx_v_nFrames;
__pyx_t_9 = __pyx_t_3;
for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
__pyx_v_f = __pyx_t_10;
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__pyx_t_12 = (__pyx_v_rowsM - (__pyx_v__magnification * 2));
{
#if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
#undef likely
#undef unlikely
#define likely(x) (x)
#define unlikely(x) (x)
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{
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__pyx_v_cM = ((int)0xbad0bad0);
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__pyx_v_cM = __pyx_t_17;
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__pyx_t_18 = (__pyx_v__doIntensityWeighting != 0);
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/* … */
goto __pyx_L14;
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101: else:
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__pyx_L14:;
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}
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}
#if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
#undef likely
#undef unlikely
#define likely(x) __builtin_expect(!!(x), 1)
#define unlikely(x) __builtin_expect(!!(x), 0)
#endif
}
}
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104: # tag-end
105:
106: # tag-copy: _le_radial_gradient_convergence.RadialGradientConvergence._run_unthreaded; replace("_run_unthreaded", "_run_threaded_static"); replace("range(_magnification*2, rowsM - _magnification*2)", 'prange(_magnification*2, rowsM - _magnification*2, schedule="static")')
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PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
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124: cdef int f, rM, cM
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153:
154: cdef int f, rM, cM
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{
#ifdef WITH_THREAD
PyThreadState *_save;
_save = NULL;
Py_UNBLOCK_THREADS
__Pyx_FastGIL_Remember();
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/*try:*/ {
/* … */
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__Pyx_FastGIL_Forget();
Py_BLOCK_THREADS
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}
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__pyx_t_3 = __pyx_v_nFrames;
__pyx_t_9 = __pyx_t_3;
for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
__pyx_v_f = __pyx_t_10;
+157: for rM in prange(_magnification*2, rowsM - _magnification*2, schedule="dynamic"):
__pyx_t_11 = (__pyx_v__magnification * 2);
__pyx_t_12 = (__pyx_v_rowsM - (__pyx_v__magnification * 2));
{
#if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
#undef likely
#undef unlikely
#define likely(x) (x)
#define unlikely(x) (x)
#endif
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{
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{
__pyx_v_rM = (int)(__pyx_t_11 + 1 * __pyx_t_13);
/* Initialize private variables to invalid values */
__pyx_v_cM = ((int)0xbad0bad0);
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__pyx_t_16 = __pyx_t_15;
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__pyx_v_cM = __pyx_t_17;
+159: if _doIntensityWeighting:
__pyx_t_18 = (__pyx_v__doIntensityWeighting != 0);
if (__pyx_t_18) {
/* … */
goto __pyx_L14;
}
+160: rgc_map[f, rM, cM] = _c_calculate_rgc(cM, rM, &gradient_col_interp[f,0,0], &gradient_row_interp[f,0,0], colsM, rowsM, _magnification, Gx_Gy_MAGNIFICATION, fwhm, tSO, tSS, _sensitivity) * image_interp[f, rM, cM]
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__pyx_t_20 = 0;
__pyx_t_21 = 0;
__pyx_t_22 = __pyx_v_f;
__pyx_t_23 = 0;
__pyx_t_24 = 0;
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__pyx_t_29 = __pyx_v_rM;
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161: else:
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}
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#undef likely
#undef unlikely
#define likely(x) __builtin_expect(!!(x), 1)
#define unlikely(x) __builtin_expect(!!(x), 0)
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}
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164: # tag-end
165:
166: # tag-copy: _le_radial_gradient_convergence.RadialGradientConvergence._run_unthreaded; replace("_run_unthreaded", "_run_threaded_guided"); replace("range(_magnification*2, rowsM - _magnification*2)", 'prange(_magnification*2, rowsM - _magnification*2, schedule="guided")')
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PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
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184: cdef int f, rM, cM
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206:
207: # Parameters
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__pyx_v_tSO = ((2.0 * __pyx_v_sigma) + 1.0);
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__pyx_v_Gx_Gy_MAGNIFICATION = 2.0;
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216:
217: # Sizes
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221:
222: # Grid size of the global work space
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227:
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230:
231: # Calculating max slices
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+233: max_slices = int((device['device'].global_mem_size // (size_per_slice))/4) # TODO 3 is a magic number
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290:
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294: